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I would not recommend getting a pre-made box for the sub. It may not fit and sometimes the airspace is not correct depending on the sub. I would look into making my own box.
What type of music do you primarily listen to? Whats your budget? Have you fully deadened the interior yet? What headunit do you currently have? Do you want clarity with enough potential volume to damage your hearing, or just stupidly loud volume with little regard to clarity and imaging? I don't believe the kick panels Chris sells are setup for component tweets (yet?), so you'd have to sacrifice some quality and go with coaxials if you don't want to get really involved with tweeter placement and aiming, but unless you're ready to drop $500 on sound deadening if you haven't already, (Cascade is the best, hands down, and very worth the money compared to other products), the difference will be moot. Stay away from best buy and CC, all too often is their "expert" an 18 year old kid who thinks kicker is the best you can buy. Get me some of this info and I'll write up a list of my recommendations and try to get some approximate costs.
Quick roof, peel and seal, etc are all pretty equivalent to dynamat, but they fall vastly short of cascade. For one of these trucks, I plan on 200-225 sq feet of deadening in the cab. I've used peel n seal in the past, but it gets very soft and smells like asphalt in the summer.I would leave the speakers out of the dash if you're going to run kick panel speakers. Pick a set of 6.5" coaxials (2 way) or 3 ways for the kick panels, brands to look for in order from best to good are Rainbow, Arc, Focal, Eclipse. With your budget in mind, I'd look to the eclipse, or even Kenwood or pioneer would be suitable. 6x9's, don't put a lot of concern into these, a good set of pioneer or kenwood 6x9's would be fine, try to find 2 way speakers. As far as subs go, avoid cheap. Dynaudio Esotar 1200 Is the best you can buy hands down. Its deep, so if you're still using the bench seat, it may be too big to fit behind the seat, in that case, a shallow mount sub would be sufficient, one of these would fit the bill nicely http://www.crutchfield.com/p_113XW1200/Kenwood-Excelon-KFC-XW1200F.html?c=3&tp=111, build a 0.8 cubic foot sealed box. Amplify everything. Tru S44 and S500 are your best bet for amps, they are pricey but worth every penny of their $799 each price tags. If you must buy something cheaper, kicker makes DECENT amps, a 4 channel and a 2 channel for the amp bridged to one channel. (sx600.2). As far as the head unit, nothing but eclipse. The Eclipse CD5030 when it comes out would be suitable. You're looking for 3 sets of preamp outputs, and the cd5030 is the cheaper way to do that. Otherwise, its the CD7200MKII.
Hey werewolf: have you ever tried Second Skin damplifier pro? Based on what I've heard, it's vastly superior to Dynamat, at a lower cost. Not sure how it compares to Cascade.Also, my current theory is that single cab trucks don't need rear fill at all. My plan is to simply run front coax's mounted in kick panels and a down-firing sub under the seat. A very basic, easy to tune, 2.1 system. It's obvious you have some sort of expertise in the realm of car audio, so what your take on this?