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The hose/metal tube in your first picture should go to the modulator on the transmission. The other Two on there would go to something that need a vacuum source...plug them if they are not going to anything.
If any of those things are loose or not hooked up, you will have a vacuum leak there. Should be simple enough to track down and replace the hoses, and put some pipe sealer on the t-fitting and thread it tight into the manifold.
except i cant see the one that goes(maybe?) the the transmission!