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I remember the rag joint having different sizes so it will only go on one way. Did you rotate the shaft 180 and then try to bolt it on?
Supposed to go together easy, mine had some grease in there. I think your alright, though. I thought the shaft was colapsable, if so it just absorbed the thrust you put on it. I would loosen the column from the dash, remove the intermediate shaft, count turns lock to lock and the turn the wheel half that # to get centered, make sure the wheels are pointing straight and stab it all back together, put some grease where the intermediate shaft couples the steering column and gently drive it from the engine side.If you broke something it should be obvious.